PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00129889001
Common NameGSBRNA2T00129889001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family NF-YA
Protein Properties Length: 206aa    MW: 22509 Da    PI: 8.8874
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00129889001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA96.82.4e-30111166158
            CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                          +ep+YVNaKQy++Il+RR++Rak+e e+kl   +rkpylheSRhkhA++R+R+sgGrF
  GSBRNA2T00129889001 111 QEPVYVNAKQYHGILRRRKARAKAELERKL--INRKPYLHESRHKHAMKRARASGGRF 166
                          69****************************..89***********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005213.1E-32109169IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115235.425110169IPR001289Nuclear transcription factor Y subunit A
PfamPF020452.8E-26112166IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006164.0E-24113135IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS006860115135IPR018362CCAAT-binding factor, conserved site
PRINTSPR006164.0E-24143166IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSKVNIWAVH SASGDDGAWK DTQAATSSPS VDNHGVEGND PAASVGNVHD QQQLVQPPEL  60
VGHYIACVPN PYQDPYYGGM VGAYGHQQLQ GFRPYPGMPG ERTALPLDMT QEPVYVNAKQ  120
YHGILRRRKA RAKAELERKL INRKPYLHES RHKHAMKRAR ASGGRFAKKT EAEAAAERER  180
EKGSATNSPG SEPVETDSND SLPNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-17110174166NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1150159RHKHAMKRAR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bna.233430.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapGSBRNA2T00129889001
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013728246.11e-145PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1
RefseqXP_013728247.11e-145PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1
SwissprotQ9LXV51e-109NFYA1_ARATH; Nuclear transcription factor Y subunit A-1
TrEMBLA0A078CP201e-153A0A078CP20_BRANA; BnaA03g04040D protein
STRINGBra006165.1-P1e-144(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM59462646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12840.34e-86nuclear factor Y, subunit A1
Publications ? help Back to Top
  1. Chalhoub B, et al.
    Plant genetics. Early allopolyploid evolution in the post-Neolithic Brassica napus oilseed genome.
    Science, 2014. 345(6199): p. 950-3
    [PMID:25146293]